Index

B

bc_connected() (in module connectomics.utils.process) bc_watershed() (in module connectomics.utils.process) bcd_watershed() (in module connectomics.utils.process) binary_connected() (in module connectomics.utils.process)

binary_watershed() (in module connectomics.utils.process) build_dataloader() (in module connectomics.data.dataset) build_from_cfg() (connectomics.data.augmentation.TestAugmentor class method) (connectomics.model.loss.Criterion class method) build_train_augmentor() (in module connectomics.data.augmentation)

C

Compose (class in connectomics.data.augmentation) connectomics.data.augmentation module connectomics.data.dataset module connectomics.data.utils module connectomics.engine module connectomics.model.arch module

connectomics.model.loss module connectomics.model.utils module connectomics.utils.process module connectomics.utils.visualizer module Criterion (class in connectomics.model.loss) CutBlur (class in connectomics.data.augmentation) CutNoise (class in connectomics.data.augmentation)

D

DataAugment (class in connectomics.data.augmentation)

DeepLabV3 (class in connectomics.model.arch)

E

Elastic (class in connectomics.data.augmentation)

F

Flip (class in connectomics.data.augmentation) forward() (connectomics.model.arch.DeepLabV3 method) (connectomics.model.arch.FPN3D method) (connectomics.model.arch.UNet2D method) (connectomics.model.arch.UNet3D method) (connectomics.model.arch.UNetPlus3D method)

FPN3D (class in connectomics.model.arch)

G

get_coord_name() (connectomics.data.dataset.TileDataset method) get_dataset() (in module connectomics.data.dataset)

get_functional_act() (in module connectomics.model.utils) Grayscale (class in connectomics.data.augmentation)

L

loadchunk() (connectomics.data.dataset.TileDataset method)

M

MisAlignment (class in connectomics.data.augmentation) MissingParts (class in connectomics.data.augmentation) MissingSection (class in connectomics.data.augmentation) MixupAugmentor (class in connectomics.data.augmentation) module connectomics.data.augmentation connectomics.data.dataset connectomics.data.utils connectomics.engine connectomics.model.arch connectomics.model.loss connectomics.model.utils connectomics.utils.process connectomics.utils.visualizer

MotionBlur (class in connectomics.data.augmentation)

P

polarity2instance() (in module connectomics.utils.process)

R

Rescale (class in connectomics.data.augmentation)

Rotate (class in connectomics.data.augmentation) run_chunk() (connectomics.engine.Trainer method)

S

save_checkpoint() (connectomics.engine.Trainer method) set_params() (connectomics.data.augmentation.CutBlur method) (connectomics.data.augmentation.CutNoise method) (connectomics.data.augmentation.DataAugment method) (connectomics.data.augmentation.Elastic method) (connectomics.data.augmentation.Flip method) (connectomics.data.augmentation.Grayscale method) (connectomics.data.augmentation.MisAlignment method) (connectomics.data.augmentation.MissingParts method) (connectomics.data.augmentation.MissingSection method) (connectomics.data.augmentation.MotionBlur method) (connectomics.data.augmentation.Rescale method) (connectomics.data.augmentation.Rotate method)

SplitActivation (class in connectomics.model.utils)

T

test() (connectomics.engine.Trainer method) TestAugmentor (class in connectomics.data.augmentation)

TileDataset (class in connectomics.data.dataset) train() (connectomics.engine.Trainer method) Trainer (class in connectomics.engine)

U

UNet2D (class in connectomics.model.arch) UNet3D (class in connectomics.model.arch) UNetPlus3D (class in connectomics.model.arch)

update_checkpoint() (connectomics.engine.Trainer method) update_name() (connectomics.data.augmentation.TestAugmentor method) updatechunk() (connectomics.data.dataset.TileDataset method)

V

validate() (connectomics.engine.Trainer method)

Visualizer (class in connectomics.utils.visualizer) VolumeDataset (class in connectomics.data.dataset)